Using HPC Techniques to Accelerate NGS Workflows

Life Sciences_small

Next-generation sequencing (NGS) describes the modern nucleotide sequencing technologies that allow analysis of genetic material with unprecedented speed and efficiency. Its advent is shifting genome assembly from a problem of laboratory-based chemistry to one well suited to high performance computing (HPC). In simple terms, NGS involves breaking up long DNA or RNA molecules into millions of small, fragments (50 to 200 nucleotides), defined as a “reads” to be assembled into larger fragments called contigs. The process of taking genetic material, processing it on a sequencer, passing it to an HPC system for assembly, and outputting digital information in a form useful for research is contained in a “workflow,” the end-to-end flow of … [Read more...]

Video Blog: Solutions that Enable Life Sciences Advances

Ted Slater

Advanced IT solutions are transforming the life sciences industry, and there are few better places to learn about how this is happening than the Bio-IT World Conference & Expo in Boston. The conference is coming up soon, and at Cray, we're excited to highlight our computing, storage and analysis solutions. Ted Slater, senior solutions architect for life sciences at YarcData, a Cray company, will present on Wednesday, April 30, and talk about how YarcData’s Urika technology is fueling major advances. Ted's presentation, "Learn How YarcData's Graph Analytics Appliance Makes It Easy to Use Big Data in Life Sciences," is about how data-intensive research is rising in life sciences and how YarcData systems provide the functionality … [Read more...]

CUG’14 Just Around the Corner

CUG_BlogAd

It’s time again for the annual Cray User Group meeting. This year’s event will be hosted by the Swiss National Supercomputing Centre (CSCS) in the picturesque town of Lugano, Switzerland. From May 4-8 Cray users and system owners from around the world will congregate to collaborate and share their experiences. A contingent of Cray employees will join them to hear straight from the customer and to present tutorials and technical papers. While the conference will include several interesting networking events in beautiful venues, this is first and foremost a technical conference whose goal is to facilitate collaboration and information exchange in the Cray user community. This annual conference gives CUG members the opportunity to share and … [Read more...]

Discussions at the Rice Conference Highlight Role of HPC Systems in Oil & Gas

Oil and gas event

I just came back from the annual Oil and Gas High Performance Computing (HPC) Workshop hosted by Rice University and can say the event has grown rapidly to where it has become a broad investigation of the use and role of HPC in the Oil & Gas segment. In terms of attendance, the conference impressed with more than 300 registrants. For the first time, it also featured “Lightning Talks”; those rapid-fire, few slides, special effects, big font size presentations so beloved by the West Coast/Silicon Valley computer industry. (Perhaps next year, we’ll see some VCs showing up? The HPC industry in Oil & Gas is certainly big enough and innovating dramatically enough to warrant their presence). At such events, it’s customary to focus on … [Read more...]

Another Exciting Year

Pete's Blog_holiday 2013

As we near the end of 2013, Cray is closing out one of the most transformative years in our long and proud history. In just this year alone, we successfully integrated two strategic acquisitions, won a number of large supercomputing contracts at customer sites around the world, significantly expanded our business and portfolio of solutions, continued to build the financial strength of the company, and added a host of highly-talented individuals to our team. It’s been quite a year! Since the early days of our company, starting with our iconic founder Seymour Cray, we have been a trusted partner to customers around the world with a commitment to do two things really well:  be focused on their success and help them to see around the next … [Read more...]